[REQUEST] Minimal tutorial
Hi,
Problem launching GAMA
I'm trying to use the gama-plugin but I don't really understand how it works.. From what I saw during my installation (docker install) the container get a part of the GAMA software (the headless part exactly) but I don't see any other connection...
I'm trying to run a simple script that Benoit send me but the execution always fail (without error in console) :
// Declare the variable
val numberOfPreys = Val[Int]
val numberOfPreysAvg = Val[Double]
val nbPreysInit = Val[Int]
val seed = Val[Int]
// Gama task
// The first argument is the gaml
// The second argument of the GamaTask is the gama experiment name
// The third argument is the number of steps
val gama =
GamaTask(workDirectory , "predatorPrey.gaml", experiment = "prey_predatorExp", maxStep = 10, seed = seed) set (
inputs += nbPreysInit mapped "nb_preys_init",
outputs += numberOfPreys mapped "nb_preys",
) // Yes, the file is well placed
val average =
ScalaTask("val numberOfPreysAvg = numberOfPreys.map(_.toDouble).average") set (
inputs += numberOfPreys.toArray,
outputs += numberOfPreysAvg
)
val csvHook = CSVHook(workDirectory / "result.csv", nbPreysInit, numberOfPreysAvg)
DirectSampling(
evaluation = Replication(gama, seed, 10, aggregation = average) hook csvHook,
sampling = nbPreysInit in (0 to 200 by 10)
)Problem with demo OMS script
Moreover (it may be because I'm not using this properly) the demo code (here) fail and return plenty of errors in my console as below :
openmole_1 | Exception in thread "Thread-84" org.openmole.core.exception.InternalProcessingError: Error in antsTask@1491478695 for context values {diffusionRate=21.0, evaporationRate=9.0, openmole$seed=-1967721350612162129, population=125.0, seed=0}
openmole_1 | at org.openmole.core.workflow.tools.InputOutputCheck$.$anonfun$perform$1(InputOutputCheck.scala:126)
openmole_1 | at org.openmole.core.expansion.FromContext.apply(FromContext.scala:243)
openmole_1 | at org.openmole.core.expansion.FromContext.from(FromContext.scala:244)
openmole_1 | at org.openmole.core.workflow.task.Task.perform(Task.scala:96)
openmole_1 | at org.openmole.core.workflow.task.Task.perform$(Task.scala:94)
openmole_1 | at org.openmole.plugin.task.netlogo6.NetLogo6Task.perform(NetLogo6Task.scala:117)
openmole_1 | at org.openmole.core.workflow.job.MoleJob.perform(MoleJob.scala:87)
openmole_1 | at org.openmole.core.workflow.execution.LocalExecutor.$anonfun$run$2(LocalExecutor.scala:62)
openmole_1 | at scala.collection.Iterator.foreach(Iterator.scala:937)
openmole_1 | at scala.collection.Iterator.foreach$(Iterator.scala:937)
openmole_1 | at scala.collection.AbstractIterator.foreach(Iterator.scala:1425)
openmole_1 | at scala.collection.IterableLike.foreach(IterableLike.scala:70)
openmole_1 | at scala.collection.IterableLike.foreach$(IterableLike.scala:69)
openmole_1 | at scala.collection.AbstractIterable.foreach(Iterable.scala:54)
openmole_1 | at org.openmole.core.workflow.execution.LocalExecutor.$anonfun$run$1(LocalExecutor.scala:58)
openmole_1 | at org.openmole.core.outputmanager.OutputManager$.withStreamOutputs(OutputManager.scala:123)
openmole_1 | at org.openmole.core.workflow.execution.LocalExecutor.withRedirectedOutput(LocalExecutor.scala:119)
openmole_1 | at org.openmole.core.workflow.execution.LocalExecutor.run(LocalExecutor.scala:54)
openmole_1 | at java.lang.Thread.run(Thread.java:748)
openmole_1 | Caused by: org.openmole.core.exception.UserBadDataError: Error while opening the file /home/mole/workspace/.tmp/fd2c58a1-7799-4cfe-8601-1a2828e15889/execution8f20a3ea-dc27-458f-b961-6750d3cfe287/netlogoworkpsace73ef9d36-f65d-4b8a-af77-3816a205c871/projects/ants.nlogo:
openmole_1 | | java.lang.Exception: Unable to open model with current format: /home/mole/workspace/.tmp/fd2c58a1-7799-4cfe-8601-1a2828e15889/execution8f20a3ea-dc27-458f-b961-6750d3cfe287/netlogoworkpsace73ef9d36-f65d-4b8a-af77-3816a205c871/projects/ants.nlogo
openmole_1 | | at org.nlogo.api.ModelLoader.readModel(ModelLoader.scala:65)
openmole_1 | | at org.nlogo.api.ModelLoader.readModel$(ModelLoader.scala:60)
openmole_1 | | at org.nlogo.api.ConfigurableModelLoader.readModel(ModelLoader.scala:106)
openmole_1 | | at org.nlogo.headless.HeadlessWorkspace.open(HeadlessWorkspace.scala:502)
openmole_1 | | at org.openmole.plugin.tool.netlogo6.NetLogo6.open(NetLogo6.java:53)
openmole_1 | | at org.openmole.plugin.task.netlogo.NetLogoTask$.$anonfun$openNetLogoWorkspace$3(NetLogoTask.scala:89)
openmole_1 | | at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
openmole_1 | | at org.openmole.plugin.task.netlogo.NetLogoTask$.wrapError(NetLogoTask.scala:59)
openmole_1 | | at org.openmole.plugin.task.netlogo.NetLogoTask$.$anonfun$openNetLogoWorkspace$2(NetLogoTask.scala:89)
openmole_1 | | at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
openmole_1 | | at org.openmole.tool.thread.package$.withThreadClassLoader(package.scala:53)
openmole_1 | | at org.openmole.core.code.CodePackage.withThreadClassLoader(CodePackage.scala:49)
openmole_1 | | at org.openmole.core.code.CodePackage.withThreadClassLoader$(CodePackage.scala:48)
openmole_1 | | at org.openmole.core.workflow.dsl$.withThreadClassLoader(package.scala:46)
openmole_1 | | at org.openmole.plugin.task.netlogo.NetLogoTask$.openNetLogoWorkspace(NetLogoTask.scala:88)
openmole_1 | | at org.openmole.plugin.task.netlogo.NetLogoTask$.createInstance$1(NetLogoTask.scala:127)
openmole_1 | | at org.openmole.plugin.task.netlogo.NetLogoTask$.$anonfun$createPool$1(NetLogoTask.scala:136)
openmole_1 | | at org.openmole.tool.cache.WithNewInstance.apply(Pool.scala:59)
openmole_1 | | at org.openmole.plugin.task.netlogo.NetLogoTask.$anonfun$process$1(NetLogoTask.scala:328)
openmole_1 | | at org.openmole.core.expansion.FromContext.apply(FromContext.scala:243)
openmole_1 | | at org.openmole.core.expansion.FromContext.from(FromContext.scala:244)
openmole_1 | | at org.openmole.core.workflow.tools.InputOutputCheck$.$anonfun$perform$1(InputOutputCheck.scala:123)
openmole_1 | | at org.openmole.core.expansion.FromContext.apply(FromContext.scala:243)
openmole_1 | | at org.openmole.core.expansion.FromContext.from(FromContext.scala:244)
openmole_1 | | at org.openmole.core.workflow.task.Task.perform(Task.scala:96)
openmole_1 | | at org.openmole.core.workflow.task.Task.perform$(Task.scala:94)
openmole_1 | | at org.openmole.plugin.task.netlogo6.NetLogo6Task.perform(NetLogo6Task.scala:117)
openmole_1 | | at org.openmole.core.workflow.job.MoleJob.perform(MoleJob.scala:87)
openmole_1 | | at org.openmole.core.workflow.execution.LocalExecutor.$anonfun$run$2(LocalExecutor.scala:62)
openmole_1 | | at scala.collection.Iterator.foreach(Iterator.scala:937)
openmole_1 | | at scala.collection.Iterator.foreach$(Iterator.scala:937)
openmole_1 | | at scala.collection.AbstractIterator.foreach(Iterator.scala:1425)
openmole_1 | | at scala.collection.IterableLike.foreach(IterableLike.scala:70)
openmole_1 | | at scala.collection.IterableLike.foreach$(IterableLike.scala:69)
openmole_1 | | at scala.collection.AbstractIterable.foreach(Iterable.scala:54)
openmole_1 | | at org.openmole.core.workflow.execution.LocalExecutor.$anonfun$run$1(LocalExecutor.scala:58)
openmole_1 | | at org.openmole.core.outputmanager.OutputManager$.withStreamOutputs(OutputManager.scala:123)
openmole_1 | | at org.openmole.core.workflow.execution.LocalExecutor.withRedirectedOutput(LocalExecutor.scala:119)
openmole_1 | | at org.openmole.core.workflow.execution.LocalExecutor.run(LocalExecutor.scala:54)
openmole_1 | | at java.lang.Thread.run(Thread.java:748)
openmole_1 | at org.openmole.plugin.task.netlogo.NetLogoTask$.wrapError(NetLogoTask.scala:63)
openmole_1 | at org.openmole.plugin.task.netlogo.NetLogoTask$.$anonfun$openNetLogoWorkspace$2(NetLogoTask.scala:89)
openmole_1 | at scala.runtime.java8.JFunction0$mcV$sp.apply(JFunction0$mcV$sp.java:12)
openmole_1 | at org.openmole.tool.thread.package$.withThreadClassLoader(package.scala:53)
openmole_1 | at org.openmole.core.code.CodePackage.withThreadClassLoader(CodePackage.scala:49)
openmole_1 | at org.openmole.core.code.CodePackage.withThreadClassLoader$(CodePackage.scala:48)
openmole_1 | at org.openmole.core.workflow.dsl$.withThreadClassLoader(package.scala:46)
openmole_1 | at org.openmole.plugin.task.netlogo.NetLogoTask$.openNetLogoWorkspace(NetLogoTask.scala:88)
openmole_1 | at org.openmole.plugin.task.netlogo.NetLogoTask$.createInstance$1(NetLogoTask.scala:127)
openmole_1 | at org.openmole.plugin.task.netlogo.NetLogoTask$.$anonfun$createPool$1(NetLogoTask.scala:136)
openmole_1 | at org.openmole.tool.cache.WithNewInstance.apply(Pool.scala:59)
openmole_1 | at org.openmole.plugin.task.netlogo.NetLogoTask.$anonfun$process$1(NetLogoTask.scala:328)
openmole_1 | at org.openmole.core.expansion.FromContext.apply(FromContext.scala:243)
openmole_1 | at org.openmole.core.expansion.FromContext.from(FromContext.scala:244)
openmole_1 | at org.openmole.core.workflow.tools.InputOutputCheck$.$anonfun$perform$1(InputOutputCheck.scala:123)
openmole_1 | ... 18 more