Implement Client / Server application and build up API

README.md

@@ -8,5 +8,5 @@ Publish OpenMOLE artifacts locally:
 git clone https://gitlab.openmole.org/openmole/openmole.git
 cd openmole
 git checkout 14-dev
-./publishLocal
+./publishLocal.sh
 ```

build.sbt

-name := "visu"
+val Organization = "org.openmole"
+val Name = "Visu playground"
+val Version = "0.4"
+val ScalaVersion = "2.13.5"
+val scalatraVersion = "2.7.1"
+val jettyVersion = "11.0.2"
+val json4sVersion = "3.6.11"
+val autowireVersion = "0.3.3"
+val boopickleVersion = "1.3.3"
+val laminarVersion = "0.12.2"
+val scaladgetVersion = "1.9.0"
+val scalajsDomVersion = "1.1.0"
+val scalatagsVersion = "0.9.4"
+val plotlyVersion = "1.5.4"
+val openmoleVersion = "14.0-SNAPSHOT"
 
-version := "1.0-SNAPSHOT"
+lazy val shared = project.in(file("shared")) settings (
+  scalaVersion := ScalaVersion,
+    libraryDependencies += "org.openmole" %% "org-openmole-plugin-method-evolution" % openmoleVersion
+  ) enablePlugins (ScalaJSPlugin)
 
-scalaVersion := "2.13.5"
 
-libraryDependencies += "org.openmole" %% "org-openmole-plugin-method-evolution" % "14.0-SNAPSHOT"
+lazy val go = taskKey[Unit]("go")
+
+lazy val client = project.in(file("client")) enablePlugins(ScalaJSPlugin, ScalaJSBundlerPlugin) settings(
+  version := Version,
+  scalaVersion := ScalaVersion,
+  scalaJSUseMainModuleInitializer := true,
+  //skip in packageJSDependencies := false,
+  libraryDependencies ++= Seq(
+    "com.lihaoyi" %%% "autowire" % autowireVersion,
+    "io.suzaku" %%% "boopickle" % boopickleVersion,
+    "com.raquo" %%% "laminar" % laminarVersion,
+    "org.openmole" %%% "scala-js-plotlyjs" % plotlyVersion,
+    "org.openmole.scaladget" %%% "tools" % scaladgetVersion,
+    "org.openmole.scaladget" %%% "svg" % scaladgetVersion,
+    "org.openmole.scaladget" %%% "bootstrapnative" % scaladgetVersion,
+    "org.scala-js" %%% "scalajs-dom" % scalajsDomVersion,
+    "org.json4s" %% "json4s-jackson" % json4sVersion
+  )
+) dependsOn (shared)
+
+lazy val server = project.in(file("server")) settings(
+  organization := Organization,
+  name := Name,
+  version := Version,
+  scalaVersion := ScalaVersion,
+  libraryDependencies ++= Seq(
+    "com.lihaoyi" %% "autowire" % autowireVersion,
+    "io.suzaku" %% "boopickle" % boopickleVersion,
+    "com.lihaoyi" %% "scalatags" % scalatagsVersion,
+    "org.scalatra" %% "scalatra" % scalatraVersion,
+    "ch.qos.logback" % "logback-classic" % "1.2.3" % "runtime",
+    "javax.servlet" % "javax.servlet-api" % "4.0.1" % "provided",
+    "org.eclipse.jetty" % "jetty-webapp" % jettyVersion,
+    "org.eclipse.jetty" % "jetty-server" % jettyVersion,
+    "org.openmole" %% "org-openmole-plugin-method-evolution" % openmoleVersion
+  )
+) dependsOn (shared) enablePlugins (ScalatraPlugin)
+
+
+lazy val bootstrap = project.in(file("target/bootstrap")) enablePlugins(ScalaJSPlugin, ScalaJSBundlerPlugin) settings(
+  version := Version,
+  scalaVersion := ScalaVersion,
+  go := {
+    val jsBuild = (client / Compile / fullOptJS / webpack).value.head.data
+
+    val demoTarget = (server / Compile / target).value
+    val demoResource = (client / Compile / resourceDirectory).value
+
+
+    IO.copyFile(jsBuild, demoTarget / "webapp/js/demo.js")
+    IO.copyDirectory(demoResource, demoTarget)
+  }) dependsOn(client, server)

client/src/main/resources/webapp/WEB-INF/web.xml

+<?xml version="1.0" encoding="UTF-8"?>
+<web-app xmlns="http://java.sun.com/xml/ns/javaee"
+      xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+      xsi:schemaLocation="http://java.sun.com/xml/ns/javaee http://java.sun.com/xml/ns/javaee/web-app_3_0.xsd"
+      version="3.0">
+
+  <!--
+    This listener loads a class in the default package called ScalatraBootstrap.
+    That class should implement org.scalatra.LifeCycle.  Your app can be
+    configured in Scala code there.
+  -->
+  <listener>
+    <listener-class>org.scalatra.servlet.ScalatraListener</listener-class>
+  </listener>
+</web-app>

client/src/main/resources/webapp/css/styleWUI.css

+
+body{
+    margin: 0;
+    padding: 0;
+    overflow:hidden;
+}
+
+p{ 
+     text-align: center; 
+     overflow: overlay;
+     position: relative;
+}
+
+body{
+    -webkit-touch-callout: none;
+    -webkit-user-select: none;
+    -khtml-user-select: none;
+    -moz-user-select: none;
+    -ms-user-select: none;
+    user-select: none;
+    background-color: rgb(248, 248, 248)
+}
+
+#toolbox{
+    position: absolute;
+    bottom: 0;
+    left: 0;
+    margin-bottom: 0.5em;
+    margin-left: 1em;
+    border: 2px solid #EEEEEE;
+    border-radius: 5px;
+    padding: 1em;
+    z-index: 5;
+}
+
+#toolbox input{
+    width: 30px;
+    opacity: 0.4;
+}
+#toolbox input:hover{
+    opacity: 1;
+    cursor: pointer;
+}
+
+#hidden-file-upload{
+    display: none;
+}
+
+#download-input{
+    margin: 0 0.5em;
+}
+
+.conceptG text{
+    pointer-events: none;
+}
+
+marker{
+    fill: #333;
+}
+
+g.conceptG circle{
+    fill: #F6FBFF;
+    stroke: #333;
+    stroke-width: 2px;
+    z-index: 21;
+}
+
+g.conceptG:hover circle{
+    fill: rgb(200, 238, 1);
+}
+
+g.selected circle{
+    fill: rgb(0, 232, 255);
+}
+g.selected:hover circle{
+    fill: rgb(250, 232, 255);
+}
+
+path.link {
+    fill: none;
+    stroke: #333;
+    stroke-width: 6px;
+    cursor: default;
+}
+
+path.link:hover{
+    stroke: rgb(94, 196, 204);
+}
+
+g.connect-node circle{
+    fill: #BEFFFF;
+}
+
+path.link.hidden{
+    stroke-width: 0;
+}
+
+path.link.selected {
+    stroke: rgb(229, 172, 247);
+}

client/src/main/scala/fr/iscpif/client/Client.scala

+package client
+
+import java.nio.ByteBuffer
+import org.scalajs.dom
+
+import scala.concurrent.Future
+import boopickle.Default._
+import autowire._
+import org.scalajs
+
+import scala.concurrent.ExecutionContext.Implicits.global
+import boopickle.Default._
+
+import scala.scalajs.js.typedarray.{ArrayBuffer, TypedArrayBuffer}
+import com.raquo.laminar.api.L._
+
+import shared.DataUI
+
+object App {
+
+  def main(args: Array[String]): Unit = {
+
+    val method = Var("")
+
+    lazy val d = div(
+      h2("My plot"),
+      Histogram.build
+    )
+
+    Post[shared.Api].convergence().call().foreach {c=>
+      println("C " + c)
+    }
+
+    Post[shared.Api].metadata().call().foreach {m=>
+      m match {
+        case nsga2: DataUI.NSGA2.Metadata=> println("M " + nsga2.OMRData.method)
+        case stNSGA2: DataUI.StochasticNSGA2.Metadata=> println("M " + stNSGA2.OMRData.method)
+      }
+
+    }
+
+    documentEvents.onDomContentLoaded.foreach { _ =>
+      render(scalajs.dom.document.body, d)
+    }(unsafeWindowOwner)
+
+  }
+}
+
+object Post extends autowire.Client[ByteBuffer, Pickler, Pickler] {
+
+  override def doCall(req: Request): Future[ByteBuffer] = {
+    dom.ext.Ajax.post(
+      url = req.path.mkString("/"),
+      data = Pickle.intoBytes(req.args),
+      responseType = "arraybuffer",
+      headers = Map("Content-Type" -> "application/octet-stream")
+    ).map(r => TypedArrayBuffer.wrap(r.response.asInstanceOf[ArrayBuffer]))
+  }
+
+  override def read[Result: Pickler](p: ByteBuffer) = Unpickle[Result].fromBytes(p)
+
+  override def write[Result: Pickler](r: Result) = Pickle.intoBytes(r)
+
+}

client/src/main/scala/fr/iscpif/client/Histogram.scala

+package client
+
+import org.openmole.plotlyjs._
+import org.openmole.plotlyjs.all._
+
+import scala.scalajs.js.JSConverters._
+import org.openmole.plotlyjs.PlotlyImplicits._
+import com.raquo.laminar.api.L._
+
+import org.openmole.plotlyjs.HistogramDataBuilder.HistogramDataBuilder
+
+import scala.scalajs._
+
+object Histogram {
+
+  def build = {
+    val plotDiv = div()
+
+    val layout = Layout
+      .title("My line plot")
+      .grid(grid.columns(3).rows(1).pattern(Pattern.coupled))
+      .showlegend(true)
+
+    val data1 = histogram
+      .x(Utils.randomInts(500))
+      .name("First serie")
+      .xbins(Bin.start(0.0).end(1000.0).size(25))
+
+    val data2 = histogram
+      .x(Utils.anArray.toJSArray)
+      .xaxis("x2")
+      .name("Second serie")
+
+    val data3 = histogram
+      .x(Utils.anArray.toJSArray)
+      .xaxis("x3")
+      .name("Second serie")
+
+    Plotly.newPlot(plotDiv.ref, js.Array(data1, data2, data3), layout = layout)
+
+    plotDiv
+  }
+}
\ No newline at end of file

client/src/main/scala/fr/iscpif/client/Utils.scala

+package client
+
+/*
+ * Copyright (C) 24/03/16 // mathieu.leclaire@openmole.org
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Affero General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Affero General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ */
+
+import scala.scalajs.js.JSConverters._
+
+object Utils {
+
+  lazy val rng = scala.util.Random
+
+  val viridis = Seq(
+    "440154",
+    "481567",
+    "482677",
+    "453781",
+    "404788",
+    "39568C",
+    "33638D",
+    "2D708E",
+    "287D8E",
+    "238A8D",
+    "1F968B",
+    "20A387",
+    "29AF7F",
+    "3CBB75",
+    "55C667",
+    "73D055",
+    "95D840",
+    "B8DE29",
+    "DCE319",
+    "FDE725"
+  )
+
+  def randomDoubles(nb: Int = 100, ratio: Int = 1000) = Seq.fill(nb)(rng.nextDouble * ratio).toJSArray
+
+  def randomDoublesAsStrings(nb: Int = 100, ratio: Int = 1000) = Seq.fill(nb)((rng.nextDouble * ratio).toString).toJSArray
+
+  def randomInts(nb: Int = 100, ratio: Int = 1000) = Seq.fill(nb)(rng.nextInt(ratio)).toJSArray
+
+  def anArray = Array(
+    4.9,
+    4.7,
+    4.6,
+    5.0,
+    5.4,
+    4.6,
+    5.0,
+    4.4,
+    4.9,
+    5.4,
+    4.8,
+    4.8,
+    4.3,
+    5.8,
+    5.7,
+    5.4,
+    5.1,
+    5.7,
+    5.1,
+    5.4,
+    5.1,
+    4.6,
+    5.1,
+    4.8,
+    5.0,
+    5.0,
+    5.2,
+    5.2,
+    4.7,
+    4.8,
+    5.4,
+    5.2,
+    5.5,
+    4.9,
+    5.0,
+    5.5,
+    4.9,
+    4.4,
+    5.1,
+    5.0,
+    4.5,
+    4.4,
+    5.0,
+    5.1,
+    4.8,
+    5.1,
+    4.6,
+    5.3,
+    5.0,
+    7.0,
+    6.4,
+    6.9,
+    5.5,
+    6.5,
+    5.7,
+    6.3,
+    4.9,
+    6.6,
+    5.2,
+    5.0,
+    5.9,
+    6.0,
+    6.1,
+    5.6,
+    6.7,
+    5.6,
+    5.8,
+    6.2,
+    5.6,
+    5.9,
+    6.1,
+    6.3,
+    6.1,
+    6.4,
+    6.6,
+    6.8,
+    6.7,
+    6.0,
+    5.7,
+    5.5,
+    5.5,
+    5.8,
+    6.0,
+    5.4,
+    6.0,
+    6.7,
+    6.3,
+    5.6,
+    5.5,
+    5.5,
+    6.1,
+    5.8,
+    5.0,
+    5.6,
+    5.7,
+    5.7,
+    6.2,
+    5.1,
+    5.7,
+    6.3,
+    5.8,
+    7.1,
+    6.3,
+    6.5,
+    7.6,
+    4.9,
+    7.3,
+    6.7,
+    7.2,
+    6.5,
+    6.4,
+    6.8,
+    5.7,
+    5.8,
+    6.4,
+    6.5,
+    7.7,
+    7.7,
+    6.0,
+    6.9,
+    5.6,
+    7.7,
+    6.3,
+    6.7,
+    7.2,
+    6.2,
+    6.1,
+    6.4,
+    7.2,
+    7.4,
+    7.9,
+    6.4,
+    6.3,
+    6.1,
+    7.7,
+    6.3,
+    6.4,
+    6.0,
+    6.9,
+    6.7,
+    6.9,
+    5.8,
+    6.8,
+    6.7,
+    6.7,
+    6.3,
+    6.5,
+    6.2,
+    5.9).toJSArray
+}

project/plugins.sbt

+resolvers += "Typesafe repository" at "https://repo.typesafe.com/typesafe/releases/"
+addSbtPlugin("org.scala-js" % "sbt-scalajs" % "1.5.1")
+
+addSbtPlugin("ch.epfl.scala" % "sbt-scalajs-bundler" % "0.20.0")
+
+addSbtPlugin("org.scalatra.sbt" % "sbt-scalatra" % "1.0.4")
+
+addSbtPlugin("com.timushev.sbt" % "sbt-updates" % "0.5.3")
\ No newline at end of file

server/src/main/scala/ScalatraBootstrap.scala

+import server._
+import org.scalatra._
+import javax.servlet.ServletContext
+
+
+class ScalatraBootstrap extends LifeCycle {
+
+  override def init(context: ServletContext) {
+
+    context.mount(new Servlet, "/*")
+  }
+}
\ No newline at end of file

server/src/main/scala/fr/iscpif/app/ApiImpl.scala

+package server
+
+object ApiImpl extends shared.Api {
+
+  def convergence()= OpenMOLEMethods.convergence
+
+  def metadata()= OpenMOLEMethods.metadata
+}

server/src/main/scala/fr/iscpif/app/OpenMOLEMethods.scala

+package server
+
+
+import org.openmole.core.workflow.test.Stubs
+import org.openmole.plugin.hook.omr.OMROutputFormat.OMRData
+import org.openmole.plugin.method.evolution.{Analysis, data}
+import org.openmole.plugin.method.evolution.Analysis.NSGA2
+import org.openmole.plugin.method.evolution.data.EvolutionMetadata.{ExactObjective, GenomeBoundData, NoisyObjective}
+import org.openmole.plugin.method.evolution.data.EvolutionMetadata.GenomeBoundData._
+import org.openmole.plugin.method.evolution.data.{AnalysisData, EvolutionMetadata, SaveOption}
+import shared.DataUI
+
+import java.io.File
+
+object OpenMOLEMethods {
+
+  import Stubs._
+
+  implicit def toNSGA2ConvergenceDataUI(convergence: AnalysisData.NSGA2.Convergence): DataUI.Convergence =
+    DataUI.NSGA2.Convergence(convergence.generations.map { gc => DataUI.NSGA2.GenerationConvergence(gc.generation, gc.hypervolume, gc.minimums) })
+
+  implicit def toStochasticNSGA2ConvergenceDataUI(convergence: AnalysisData.StochasticNSGA2.Convergence): DataUI.Convergence =
+    DataUI.StochasticNSGA2.Convergence(convergence.generations.map { gc => DataUI.StochasticNSGA2.GenerationConvergence(gc.generation, gc.hypervolume, gc.minimums) })
+
+  implicit def toOMRDataUI(OMRData: OMRData): DataUI.OMRData = DataUI.OMRData(OMRData.method, OMRData.fileName, OMRData.version)
+
+  implicit def toGenomeUI(genomeBoundDatas: Seq[GenomeBoundData]): Seq[DataUI.GenomeBoundData] =
+    genomeBoundDatas.map {
+      _ match {
+        case DoubleBound(name, low, high) => DataUI.GenomeBoundData.DoubleBound(name, low, high)
+        case IntBound(name, low, high) => DataUI.GenomeBoundData.IntBound(name, low, high)
+        case DoubleSequenceBound(name, low, high) => DataUI.GenomeBoundData.DoubleSequenceBound(name, low, high)
+        case IntSequenceBound(name, low, high) => DataUI.GenomeBoundData.IntSequenceBound(name, low, high)
+        case Enumeration(name, values) => DataUI.GenomeBoundData.Enumeration(name, values)
+      }
+    }
+
+  implicit def toSaveOptionUI(saveOption: SaveOption): DataUI.SaveOption = DataUI.SaveOption(saveOption.frequency, saveOption.last)
+
+  implicit def toExactObjectiveUI(objectives: Seq[ExactObjective]): Seq[DataUI.ExactObjective] = objectives.map{ob=> DataUI.ExactObjective(ob.name, ob.delta, ob.negative)}
+
+  implicit def toNoisyObjectiveUI(objectives: Seq[NoisyObjective]): Seq[DataUI.NoisyObjective] = objectives.map{ob=> DataUI.NoisyObjective(ob.name, ob.delta, ob.negative)}
+
+  implicit def toNSGA2EvolutionMetadataUI(emd: data.EvolutionMetadata.NSGA2): DataUI.NSGA2.EvolutionMetadata =
+    DataUI.NSGA2.EvolutionMetadata(emd.genome, emd.objective, emd.populationSize, emd.generation, emd.saveOption)
+
+  implicit def toStochasticNSGA2EvolutionMetadataUI(emd: data.EvolutionMetadata.StochasticNSGA2): DataUI.StochasticNSGA2.EvolutionMetadata =
+    DataUI.StochasticNSGA2.EvolutionMetadata(emd.